This function takes in a CBEA type object and collects all values across all sets and samples that were evaluated.
Usage
# S3 method for CBEAout
tidy(x, ...)Value
A tidy tibble::tibble() summarizing scores per sample per set.
Examples
# load the data
data(hmp_gingival)
mod <- cbea(hmp_gingival$data, hmp_gingival$set, abund_values = "16SrRNA",
output = "sig", distr = "norm", adj = FALSE, n_perm = 5, parametric = TRUE)
#> Warning: Taxonomic count table contains zeros,
#> which would invalidate the log-ratio transform.
#> Adding a pseudocount of 1e-5...
tidy(mod)
#> # A tibble: 369 × 4
#> sample_ids Aerobic Anaerobic F_Anaerobic
#> <chr> <dbl> <dbl> <dbl>
#> 1 700014427 1 0 1
#> 2 700014521 0 0 1
#> 3 700014603 1 0 0
#> 4 700014749 1 0 1
#> 5 700014791 0 0 1
#> 6 700014917 1 0 1
#> 7 700014989 0 1 0
#> 8 700015076 1 0 1
#> 9 700015149 0 0 1
#> 10 700015215 0 1 0
#> # … with 359 more rows